Publications 2013

Title Author Reference Year Url / DOI
A combined Raman-fluorescence spectroscopic probe for tissue diagnostics applications Cicchi, R. et al. Proc. SPIE 8798, 87980C 2013 http://dx.doi.org/10.1117/12.2031370
A low memory cost model based reconstruction algorithm exploiting translational symmetry for photoacustic microscopy Aguirre, J., A. Giannoula, T. Minagawa, L. Funk, P. Turon and T. Durduran Biomed. Opt. Express 4, 2813-2827 2013 http://dx.doi.org/10.1364/BOE.4.002813
A plasmonic ‘antenna-in-box’ platform for enhanced single-molecule analysis at micromolar concentrations Punj, D. et al. Nature Nanotechnology 8, 512-516 2013 http://dx.doi.org/10.1038/nnano.2013.98
A Platform for 3D Tracking of Single Molecules in Living Cells Gardini, L. et al. Biophys. J. 104, 526a 2013 http://dx.doi.org/10.1016/j.bpj.2012.11.2911
A Resonant Scanning Dipole-Antenna Probe for Enhanced Nanoscale Imaging Neumann, L. et al. Nano Lett. 13, 5070–5074 2013 http://dx.doi.org/10.1021/nl402178b
Advanced Optical Techniques to Explore Brain Structure and Function Silvestri, L. et al. J. Innov. Opt. Health Sci. 06, 1230002 2013 http://dx.doi.org/10.1142/S1793545812300029
Analysis of single-molecule mechanical measurements with high spatio-temporal resolution Capitanio, M. et al. Proc. SPIE 8810, 881034 2013 http://dx.doi.org/10.1117/12.2030455
Analysis of spectrally resolved autofluorescence images by support vector machines Mateasik, A. et al. Proc. SPIE 8588, 85882J 2013 http://dx.doi.org/10.1117/12.2001371
Automated algorithm for quantitative analysis of fluorescence nanoscopy images Manzo, C. et al. Biophys. J. 104, 668a 2013 http://dx.doi.org/10.1016/j.bpj.2012.11.3688
Blue LED treatment of superficial abrasions Alfieri, D. et al. Proc. SPIE 8565, 85650H 2013 http://dx.doi.org/10.1117/12.2003933
Breakthroughs in Photonics 2012: Nonlinear Laser Imaging for Neuroscience Allegra Mascaro, A. L. et al. IEEE Photonics Journal 5, 0701006 2013 http://dx.doi.org/10.1109/JPHOT.2013.2250941
Broadband photon time-of-flight spectroscopy of pharmaceuticals and highly scattering plastics in the VIS and close NIR spectral ranges Khoptyar, D. et al. Opt. Express 21, 20941 2013 http://dx.doi.org/10.1364/OE.21.020941
Cell wall constrains lateral diffusion of plant plasma-membrane proteins Martinière A. et al. PNAS 109, 12805-10 2013 http://dx.doi.org/10.1073/pnas.1202040109
Characterization of atherosclerotic arterial tissue using multimodal non-linear optical microscopy Cicchi, R. et al. Proc. SPIE 8797, 87970D 2013 http://dx.doi.org/10.1117/12.2030879
Combined fluorescence-Raman spectroscopic setup for the diagnosis of melanocytic lesions Cicchi, R. et al. J. Biophoton. 7, 86–95 2013 http://dx.doi.org/10.1002/jbio.201200230
Combined single-molecule manipulation and localization for the study of lac Repressor 1D-diffusion along DNA Belcastro, G. et al. Proc. SPIE 8810, 88102O 2013 http://dx.doi.org/10.1117/12.2023596
Continuous Optical Monitoring of Cerebral Hemodynamics During Head-of-Bed Manipulation in Brain-Injured Adults Kim, M.N., B.L. Edlow, T. Durduran, S. Frangos, R.C. Mesquita, J.M. Levine, J.H. Greenberg, et al. Neurocrit. Care 20, 443-453 2014 http://dx.doi.org/10.1007/s12028-013-9849-7
Correlative live-cell and superresolution microscopy reveals cargo transport dynamics at microtubule intersections Balint, S. et al. PNAS 110, 3375-3380 2013 http://dx.doi.org/10.1073/pnas.1219206110
Decoupling Polarization of the Golgi Apparatus and GM1 in the Plasma Membrane Bisel B et al. PLOS ONE 8, e80446 2013 http://dx.doi.org/10.1371/journal.pone.0080446
Development of a novel combined fluorescence and reflectance spectroscopy system for guiding high-grade glioma resections: confirmation of capability in lab experiments Mousavi, M. et al. Proc. SPIE 9032, 90320M 2013 http://dx.doi.org/10.1117/12.2044480
Diffuse optical techniques applied to wood characterisation Bargigia, I. et al. J. Near Infrared Spectrosc. 21, 259-268 2013 http://dx.doi.org/10.1255/jnirs.1068
Effect of stretching DNA on lac Repressor 1D-diffusion revealed by the combination of single-molecule localization and manipulation Belcastro, G. et al. Proc. SPIE 8797, 87970M 2013 http://dx.doi.org/10.1117/12.2032514
EUV induced ablation and surface modification of poly(vinylidene fluoride) irradiated in vacuum or gaseous environment Bartnik, A. et al. Proc. SPIE 8777, 877708 2013 http://dx.doi.org/10.1117/12.2021152
Evaluation of the oxidative stress of psoriatic fibroblasts based on spectral two-photon fluorescence lifetime imaging Kapsokalyvas, D. et al. Proc. SPIE 8588, 85882D 2013 http://dx.doi.org/10.1117/12.2001508
Femtosecond Laser Axotomy in Caenorhabditis elegans and Collateral Damage Assessment Using a Combination of Linear and Nonlinear Imaging Techniques Santos, S.I.C.O. et al. PLOS ONE 8, e58600 2013 http://dx.doi.org/10.1371/journal.pone.0058600
Fluorescence lifetime spectroscopy: potential for in-vivo estimation of skin fluorophores changes after low power laser treatment Ferulova, I. et al. Proc. SPIE 9032, 90320B 2013 http://dx.doi.org/10.1117/12.2044688
Force-clamp laser trapping of rapidly interacting molecules Capitanio, M. et al. Proc. SPIE 8797, 87970C 2013 http://dx.doi.org/10.1117/12.2032448
IDOL Stimulates Clathrin-Independent Endocytosis and Multivesicular Body-Mediated Lysosomal Degradation of the Low-Density Lipoprotein Receptor Scotti E et al. Mol. Cell. Biol. 33, 1503-1514 2013 http://dx.doi.org/10.1128/MCB.01716-12
Improved wound healing in blue LED treated superficial abrasions Rossi, F. et al. Proc. SPIE 8803, 88030S 2013 http://dx.doi.org/10.1117/12.2032550
In vivo reactive neural plasticity investigation by means of correlative two photon: electron microscopy Allegra Mascaro, A. L. et al. Proc. SPIE 8588, 85881A 2013 http://dx.doi.org/10.1117/12.2000188
In vivo single branch axotomy induces GAP-43-dependent sprouting and synaptic remodeling in cerebellar cortex. Allegra Mascaro, A.L. et al. PNAS 110, 10824-9 2013 http://dx.doi.org/10.1073/pnas.1219256110
In vivo two-photon imaging of climbing fibers plasticity after laser axotomy Allegra Mascaro, A. L. et al. Proc. SPIE 8804, 880407 2013 http://dx.doi.org/10.1117/12.2032180
Integrating high-resolution bioimaging techniques to unravel how membrane lipids influence nanoscale organization and lateral mobility of adhesion receptors Eich, C. et al. Biophys. J. 104, 612a 2013 http://dx.doi.org/10.1016/j.bpj.2012.11.3391
Interrogating biology with force: single molecule high-resolution measurements with optical tweezers. Capitanio, M. and Pavone, F.S. Biophys. J. 105, 1293 2013 http://dx.doi.org/10.1016/j.bpj.2013.08.007
Lac Repressor-DNA Interactions assessed by Ultrafast Force-Clamp Spectroscopy Monico, C. et al. Biophys. J. 104, 417a 2013 http://dx.doi.org/10.1016/j.bpj.2012.11.2325
mTOR direct interactions with Rheb-GTPase and raptor: sub-cellular localization using fluorescence lifetime imaging Yadav RB et al. BMC Cell Biol. 14, 3 2013 http://dx.doi.org/10.1186/1471-2121-14-3
Multiphoton morpho-functional imaging of healthy colon mucosa, adenomatous polyp and adenocarcinoma Cicchi, R. et al. Biomed. Opt. Express 4, 1204-1213 2013 http://dx.doi.org/10.1364/BOE.4.001204
Muscle tissue saturation in humans studied with two non-invasive optical techniques: a comparative study Shaharin, A. et al. Proc. SPIE 9032, 90320K 2013 http://dx.doi.org/10.1117/12.2044799
Nano-groove and 3D fabrication by controlled avalanche using femtosecond laser pulses R. Buividas et al. Opt. Mater. Express 3, 1674-1686 2013 http://dx.doi.org/10.1364/OME.3.001674
Note: Comparison between a prism-based and an acousto-optic tunable filter-based spectrometer for diffusive media Farina, A., I. Bargigia, P. Taroni, A. Pifferi Rev. Sci. Instrum. 84, 016109 2013 http://dx.doi.org/10.1063/1.4789312
Novel combined fluorescence/reflectance spectroscopy system for guiding brain tumor resections: hardware considerations Xie, Z. et al. Proc. SPIE 9032, 90320R 2013 http://dx.doi.org/10.1117/12.2044717
Optical Methods to Study Protein-DNA Interactions in Vitro and in Living Cells at the Single-Molecule Level Monico, C. et al. Int. J. Mol. Sci. 14, 3961-3992 2013 http://dx.doi.org/10.3390/ijms14023961
Partitioning and confinement of GM1 ganglioside induced by amyloid aggregates Calamai, M., F. Pavone FEBS Letters 587, 1385-91 2013 http://dx.doi.org/10.1016/j.febslet.2013.03.014
Phantoms for diffuse optical imaging based on totally absorbing objects, part 1: basic concepts Martelli, F. et al. J. Biomed. Opt. 18, 66014 2013 http://dx.doi.org/10.1117/1.JBO.18.6.066014
Plasmonic antennas as design elements for coherent ultrafast nanophotonics Brinks, D. et al. PNAS 110, 18386-18390 2013 http://dx.doi.org/10.1073/pnas.1308652110
Pulsatile and steady-state hemodynamics of the human patella bone by diffuse optical spectroscopy Farzam, P., P. Zirak, T. Binzoni and T. Durduran Physiol. Meas. 34, 839 2013 http://dx.doi.org/10.1088/0967-3334/34/8/839
Quantum Coherent Energy Transfer over Varying Pathways in Single Light-Harvesting Complexes Hildner, R. et al. Science 340, 1448-1451 2013 http://dx.doi.org/10.1126/science.1235820
Realistic inhomogeneous phantoms using an equivalent black volume Martelli, F., A. Pifferi, D. Contini, L. Spinelli, A. Torricelli, M. Mazurenka, H. Wabnitz, R. Macdonald, A. Sassaroli, P. Di Ninni, G. Zaccanti Proc. SPIE 8804, 88040F 2013 http://dx.doi.org/10.1117/12.2036290
Recent advances in the development of Raman spectroscopy for deep non-invasive medical diagnosis Matousek P, Stone N. J. Biophoton. 6, 7-19 2013 http://dx.doi.org/10.1002/jbio.201200141
Recipes to make organic phantoms for diffusive optical spectroscopy Quarto, G., A. Pifferi, I. Bargigia, A. Farina, R. Cubeddu, P. Taroni Appl. Opt. 52, 2494-2502 2013 http://dx.doi.org/10.1364/AO.52.002494
Spatiotemporal dynamics of DNA repair proteins following laser microbeam induced DNA damage – When is a DSB not a DSB? Reynolds P. et al. Mutat. Res. Genet. Toxicol. Environ. Mutagen. 756, 14-20 2013 http://dx.doi.org/10.1016/j.mrgentox.2013.05.006
Spectral characterisation of dairy products using photon time-of-flight spectroscopy Nielsen, O.H.A. et al. J. Near Infrared Spectrosc. 21, 375-383 2013 http://dx.doi.org/10.1255/jnirs.1075
Spectral decomposition of NAD(P)H fluorescence components recorded by multi-wavelength fluorescence lifetime spectroscopy in living cardiac cells Chorvatova, A. et al. Laser Phys. Lett. 10, 125703 2013 http://dx.doi.org/10.1088/1612-2011/10/12/125703
Spectral morphological analysis of skin lesions with a polarization multispectral dermoscope Kapsokalyvas, D. et al. Opt. Express 21, 4826-4840 2013 http://dx.doi.org/10.1364/OE.21.004826
Sub 1-μm resolution “water-window” microscopy using a compact, laser-plasma SXR source based on a double stream gas-puff target Wachulak, P. W. et al. Nucl. Instr. Meth. Phys. Res. B 311, 42-46 2013 http://dx.doi.org/10.1016/j.nimb.2013.06.001
Surface modification of polymers for biocompatibility via exposure to extreme ultraviolet radiation. Ahad U. et al. J. Biomed. Mater. Res. A 102A, 3298–3310 2013 http://dx.doi.org/10.1002/jbm.a.34958
Techniques for 3D tracking of single molecules with nanometer accuracy in living cells Gardini, L. et al. Proc. SPIE 8797, 879703 2013 http://dx.doi.org/10.1117/12.2032502
The connectomics challenge Silvestri, L. et al. Funct. Neurol. 28, 167 2013 http://dx.doi.org/10.11138/FNeur/2013.28.3.167
The neck region regulates spatiotemporal organization and virus-binding capability of the pathogen recognition receptor DC-sign Torreno-Pina, J.A. et al. Biophys. J. 104, 610a 2013 http://dx.doi.org/10.1016/j.bpj.2012.11.3382
The transverse-axial tubular system of cardiomyocytes Ferrantini, C. et al. Cell. Mol. Life Sci. 70, 4695-4710 2013 http://dx.doi.org/10.1007/s00018-013-1410-5
Three-dimensional laser micro-sculpturing of silicone: towards bio-compatible scaffolds Rekstytė S. et al. Opt. Express 21, 17028-41 2013 http://dx.doi.org/10.1364/OE.21.017028
Time-Resolved Fluorescence Imaging Reveals Differential Interactions of N-Glycan Processing Enzymes across the Golgi Stack in Planta Schoberer J et al. Plant Physiol. 161, 1737-1754 2013 http://dx.doi.org/10.1104/pp.112.210757
Time-resolved fluorescence spectroscopy investigation of the effect of 4-hydroxynonenal on endogenous NAD(P)H in living cardiac myocytes Chorvatova, A. et al. J. Biomed. Opt. 18, 067009 2013 http://dx.doi.org/10.1117/1.JBO.18.6.067009
Time-resolved multiple probe spectroscopy Greetham GM et al. Rev. Sci. Instrum. 83, 103107 2013 http://dx.doi.org/10.1063/1.4758999
Time-resolved spectroscopy of endogenous NAD(P)H in Gluconobacter oxydans Horilova J. et al. Proc. SPIE 8588, 85880V1-11 2013 http://dx.doi.org/10.1117/12.2001368
Toward Noninvasive Characterization of Breast Cancer and Cancer Metabolism with Diffuse Optics Busch, D.R., R. Choe, T. Durduran, A.G. Yodh PET Clin. 8, 345–365 2013 http://dx.doi.org/10.1016/j.cpet.2013.04.004
Two-photon microscopy imaging of thy1GFP-M transgenic mice: a novel animal model to investigate brain dendritic cell subsets in vivo. Laperchia, C. et al. PLoS One 8, e56144 2013 http://dx.doi.org/10.1371/journal.pone.0056144
Ultra-fast force-clamp laser trapping of single molecular motors and DNA binding proteins Capitanio, M. et al. Proc. SPIE 8810, 88101E 2013 http://dx.doi.org/10.1117/12.2023592
Ultrafast Force-Clamp Spectroscopy of Single Molecular Motors and DNA Binding Proteins Capitanio, M. et al. Biophys. J. 104, 516a 2013 http://dx.doi.org/10.1016/j.bpj.2012.11.2852
Ultrafast force-clamp spectroscopy to probe lac repressor-DNA interactions Monico, C et al. Proc. SPIE 8797, 87970F 2013 http://dx.doi.org/10.1117/12.2032542
Water-window microscopy using compact, laser-plasma source based on Ar/He double stream gas-puff target Wachulak, P.W. et al. Proc. SPIE 8777, 877719 2013 http://dx.doi.org/10.1117/12.2021154
Water-window microscopy using a compact, laser-plasma SXR source based on a double-stream gas-puff target Wachulak, P.W. et al. Appl. Phys. B 111, 239 2013 http://dx.doi.org/10.1007/s00340-012-5324-y